Groupleader
Main research areas
- Functional systems description of bacterial producers of solvents and bioplastics.
- Developing techniques for functional annotation of non-model organisms.
- Developing algorithms for biological regulatory networks inference and analysis.
- Designing and developing customer tools for qualitative and quantitative analysis of lab data.
Main practical research results
- Complete and publicly available annotated genomes of solventogenic bacteria C. beijerinckii a C. diolis.
- Publicly available model of biobutanol production pathway in C. beijerinckii.
- Complete and publicly available annotated genome of bioplastics producer S. thermodepolymerans.
Main research publications
- Novel thermophilic polyhydroxyalkanoates producing strain Aneurinibacillus thermoaerophilus CCM 8960
- Phenotypic and genomic analysis of isopropanol and 1,3-propanediol producer Clostridium diolis DSM 15410
- A transcriptional response of Clostridium beijerinckii NRRL B-598 to a butanol shock
- Complete Genome Sequence of the Type Strain Tepidimonas taiwanensis LMG 22826T, a Thermophilic Alkaline Protease and Polyhydroxyalkanoate Producer
- Identification and validation of reference genes in Clostridium beijerinckii NRRL B-598 for RT-qPCR using RNA-Seq data
Projects/Industrial contracts
Unraveling the role of polyhydroxyalkanoates in Schlegelella thermodepolymerans – promising environmental bacterium for next generation biotechnology
Project beginning
2022
Project leader
Softwarový nástroj pro analýzu amplifikačních křivek qPCR
Project beginning
2022
Project leader
Genomová a fenotypová typizace průmyslově využitelné extremofilní bakterie Aneurinibacillus species H1
Project beginning
2021
Project leader
